Layers And Multi-Animations

Symbols are a great way to do something like this. You could have the wings flap in a timeline in the symbol and then move the entire bird symbol in the scene. If you prefer not to use symbols you could also use groups to accomplish this. Just put the bird in a group and animate the wing animation inside the group and move the entire group (wings and all).

Similar to this walking example: Master/slave relationship in animation/timelines